Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC21■□□□□ 0.95
COL3A1P02461 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC21■□□□□ 0.95
COL3A1P02461 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
COL3A1P02461 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
COL3A1P02461 RN7SL399P-201ENST00000471648 279 ntBASIC21■□□□□ 0.95
COL3A1P02461 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC21■□□□□ 0.95
COL3A1P02461 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC21■□□□□ 0.95
COL3A1P02461 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21■□□□□ 0.95
COL3A1P02461 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21■□□□□ 0.95
COL3A1P02461 TMEM261P1-201ENST00000604899 340 ntBASIC21■□□□□ 0.95
COL3A1P02461 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL3A1P02461 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.99■□□□□ 0.95
COL3A1P02461 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 AC009090.5-201ENST00000624886 2285 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL3A1P02461 CU639417.3-201ENST00000624240 1404 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.99■□□□□ 0.95
COL3A1P02461 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 AL133267.1-201ENST00000398220 340 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 NME2P1-201ENST00000426182 414 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
COL3A1P02461 AL442647.2-201ENST00000429864 857 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 FAM86LP-201ENST00000478302 853 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.99■□□□□ 0.95
COL3A1P02461 TIMM17BP1-201ENST00000545713 516 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 AC092552.1-201ENST00000547243 906 ntBASIC20.99■□□□□ 0.95
COL3A1P02461 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.99■□□□□ 0.95
COL3A1P02461 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.99■□□□□ 0.95
COL3A1P02461 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL3A1P02461 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL3A1P02461 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.98■□□□□ 0.95
COL3A1P02461 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
COL3A1P02461 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.98■□□□□ 0.95
COL3A1P02461 INTS4P2-202ENST00000614726 2019 ntBASIC20.98■□□□□ 0.95
COL3A1P02461 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.98■□□□□ 0.95
COL3A1P02461 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC20.98■□□□□ 0.95
COL3A1P02461 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.98■□□□□ 0.95
COL3A1P02461 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL3A1P02461 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL3A1P02461 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COL3A1P02461 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL3A1P02461 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.97■□□□□ 0.95
COL3A1P02461 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.97■□□□□ 0.95
COL3A1P02461 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 AP006294.1-201ENST00000415407 339 ntBASIC20.97■□□□□ 0.95
COL3A1P02461 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.97■□□□□ 0.95
COL3A1P02461 AC005034.1-201ENST00000426657 489 ntBASIC20.97■□□□□ 0.95
COL3A1P02461 INE1-201ENST00000456273 945 ntBASIC20.97■□□□□ 0.95
COL3A1P02461 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL3A1P02461 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.97■□□□□ 0.95
COL3A1P02461 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.97■□□□□ 0.95
COL3A1P02461 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC20.97■□□□□ 0.95
COL3A1P02461 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL3A1P02461 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL3A1P02461 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.97■□□□□ 0.95
COL3A1P02461 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.97■□□□□ 0.95
COL3A1P02461 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.97■□□□□ 0.95
COL3A1P02461 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.97■□□□□ 0.95
COL3A1P02461 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL3A1P02461 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL3A1P02461 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL3A1P02461 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms