Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CU639417.3-201ENST00000624240 1404 ntBASIC20■□□□□ 0.79
CACNA1FO60840 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CACNA1FO60840 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 INTS4P2-202ENST00000614726 2019 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AP006294.1-201ENST00000415407 339 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.99■□□□□ 0.79
CACNA1FO60840 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AC124283.3-201ENST00000570869 594 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AC008494.3-201ENST00000606615 944 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 AC093726.1-201ENST00000608064 963 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AC093525.8-201ENST00000624099 1342 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AP005117.1-202ENST00000581724 1908 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.99■□□□□ 0.79
CACNA1FO60840 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CACNA1FO60840 COX5BP8-201ENST00000416911 349 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.99■□□□□ 0.79
CACNA1FO60840 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC19.99■□□□□ 0.79
CACNA1FO60840 AL662799.1-202ENST00000614205 422 ntBASIC19.99■□□□□ 0.79
CACNA1FO60840 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.98■□□□□ 0.79
CACNA1FO60840 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.98■□□□□ 0.79
CACNA1FO60840 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 AC105250.1-201ENST00000509378 2057 ntBASIC19.98■□□□□ 0.79
CACNA1FO60840 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.98■□□□□ 0.79
CACNA1FO60840 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 GNAQP1-201ENST00000444815 1067 ntBASIC19.98■□□□□ 0.79
CACNA1FO60840 AC007389.4-201ENST00000454674 793 ntBASIC19.98■□□□□ 0.79
CACNA1FO60840 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.98■□□□□ 0.79
CACNA1FO60840 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.98■□□□□ 0.79
CACNA1FO60840 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.98■□□□□ 0.79
CACNA1FO60840 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CACNA1FO60840 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CACNA1FO60840 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 MEP1AP4-201ENST00000423244 1087 ntBASIC19.97■□□□□ 0.79
CACNA1FO60840 AL162726.2-201ENST00000438986 1017 ntBASIC19.97■□□□□ 0.79
CACNA1FO60840 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.97■□□□□ 0.79
CACNA1FO60840 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.97■□□□□ 0.79
CACNA1FO60840 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.97■□□□□ 0.79
CACNA1FO60840 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC19.97■□□□□ 0.79
CACNA1FO60840 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 AP005018.1-201ENST00000525475 301 ntBASIC19.97■□□□□ 0.79
CACNA1FO60840 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC19.97■□□□□ 0.79
CACNA1FO60840 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC19.97■□□□□ 0.79
CACNA1FO60840 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CACNA1FO60840 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CACNA1FO60840 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.97■□□□□ 0.79
CACNA1FO60840 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CACNA1FO60840 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CACNA1FO60840 AC020763.4-201ENST00000623414 4170 ntBASIC19.96■□□□□ 0.79
CACNA1FO60840 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CACNA1FO60840 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CACNA1FO60840 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
CACNA1FO60840 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CACNA1FO60840 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.96■□□□□ 0.79
CACNA1FO60840 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CACNA1FO60840 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.96■□□□□ 0.79
CACNA1FO60840 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms