Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 AP001282.1-201ENST00000531301 1499 ntBASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS9D1Q9Y2B5 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
VPS9D1Q9Y2B5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.14■□□□□ 0.18
VPS9D1Q9Y2B5 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS9D1Q9Y2B5 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.18
VPS9D1Q9Y2B5 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.14■□□□□ 0.18
VPS9D1Q9Y2B5 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 YBX2P1-201ENST00000394192 760 ntBASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AC092902.6-201ENST00000641783 218 ntBASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AC112504.1-201ENST00000623415 1841 ntBASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS9D1Q9Y2B5 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AC008677.1-201ENST00000519230 1561 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AC067930.6-201ENST00000623257 4947 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 SPDYE11-202ENST00000450699 704 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 KRT8P23-201ENST00000560090 1207 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 SPDYE9P-201ENST00000570642 692 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AC027307.2-201ENST00000591252 911 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 SPDYE10P-202ENST00000612005 668 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 SPDYE8P-202ENST00000612377 668 ntBASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.13■□□□□ 0.17
VPS9D1Q9Y2B5 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.12■□□□□ 0.17
VPS9D1Q9Y2B5 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms