Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AC092902.6-201ENST00000641783 218 ntBASIC16.72■□□□□ 0.27
PCDH9Q9HC56 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AC073347.1-201ENST00000421633 2643 ntBASIC16.72■□□□□ 0.27
PCDH9Q9HC56 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 HTR5BP-201ENST00000430851 1154 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 MKNK2P1-201ENST00000437526 628 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 ALG1L5P-201ENST00000482043 771 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 KRT18P34-201ENST00000488218 1270 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 AL365330.1-201ENST00000607459 531 ntBASIC16.71■□□□□ 0.27
PCDH9Q9HC56 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PCDH9Q9HC56 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
PCDH9Q9HC56 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.26
PCDH9Q9HC56 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
PCDH9Q9HC56 WASH6P-202ENST00000359512 1437 ntBASIC16.7■□□□□ 0.26
PCDH9Q9HC56 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC092865.5-201ENST00000545435 363 ntBASIC16.7■□□□□ 0.26
PCDH9Q9HC56 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC010327.4-202ENST00000591484 748 ntBASIC16.7■□□□□ 0.26
PCDH9Q9HC56 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms