Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.38□□□□□ -0.11
MMP28Q9H239 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.37□□□□□ -0.11
MMP28Q9H239 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 MIR600HG-201ENST00000449175 5984 ntBASIC14.37□□□□□ -0.11
MMP28Q9H239 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 AC103564.2-201ENST00000432853 1299 ntBASIC14.37□□□□□ -0.11
MMP28Q9H239 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.37□□□□□ -0.11
MMP28Q9H239 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.37□□□□□ -0.11
MMP28Q9H239 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.37□□□□□ -0.11
MMP28Q9H239 AC011467.2-201ENST00000598425 242 ntBASIC14.37□□□□□ -0.11
MMP28Q9H239 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 SBF1P1-201ENST00000444527 5631 ntBASIC14.37□□□□□ -0.11
MMP28Q9H239 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 TP73-AS1-210ENST00000637775 1455 ntBASIC14.37□□□□□ -0.11
MMP28Q9H239 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.37□□□□□ -0.11
MMP28Q9H239 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.37□□□□□ -0.11
MMP28Q9H239 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MMP28Q9H239 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
MMP28Q9H239 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.37□□□□□ -0.11
MMP28Q9H239 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.36□□□□□ -0.11
MMP28Q9H239 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 AC004870.1-201ENST00000315132 882 ntBASIC14.36□□□□□ -0.11
MMP28Q9H239 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
MMP28Q9H239 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.36□□□□□ -0.11
MMP28Q9H239 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 POM121L3P-201ENST00000419331 1163 ntBASIC14.36□□□□□ -0.11
MMP28Q9H239 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.36□□□□□ -0.11
MMP28Q9H239 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 BNIP3P18-201ENST00000593976 575 ntBASIC14.36□□□□□ -0.11
MMP28Q9H239 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.36□□□□□ -0.11
MMP28Q9H239 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
MMP28Q9H239 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MMP28Q9H239 AL137784.3-201ENST00000623858 2288 ntBASIC14.36□□□□□ -0.11
MMP28Q9H239 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms