Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AL035456.1-201ENST00000456064 1369 ntBASIC14.56□□□□□ -0.08
CPNE4Q96A23 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.56□□□□□ -0.08
CPNE4Q96A23 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.56□□□□□ -0.08
CPNE4Q96A23 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CPNE4Q96A23 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.56□□□□□ -0.08
CPNE4Q96A23 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.56□□□□□ -0.08
CPNE4Q96A23 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 AC125807.1-201ENST00000483097 614 ntBASIC14.55□□□□□ -0.08
CPNE4Q96A23 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 TUBB3P1-201ENST00000405796 1332 ntBASIC14.55□□□□□ -0.08
CPNE4Q96A23 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 AC008677.1-201ENST00000519230 1561 ntBASIC14.55□□□□□ -0.08
CPNE4Q96A23 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CPNE4Q96A23 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
CPNE4Q96A23 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 AC068587.6-202ENST00000641839 5619 ntBASIC14.54□□□□□ -0.08
CPNE4Q96A23 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 KLF2P3-201ENST00000451977 1087 ntBASIC14.54□□□□□ -0.08
CPNE4Q96A23 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.54□□□□□ -0.08
CPNE4Q96A23 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 AC006449.6-201ENST00000612330 2296 ntBASIC14.54□□□□□ -0.08
CPNE4Q96A23 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CPNE4Q96A23 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
CPNE4Q96A23 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CPNE4Q96A23 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.53□□□□□ -0.08
CPNE4Q96A23 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CPNE4Q96A23 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.53□□□□□ -0.08
CPNE4Q96A23 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.53□□□□□ -0.08
CPNE4Q96A23 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.53□□□□□ -0.08
CPNE4Q96A23 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms