Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.85■□□□□ 0.29
CDH6P55285 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
CDH6P55285 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.85■□□□□ 0.29
CDH6P55285 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.85■□□□□ 0.29
CDH6P55285 SPDYE11-202ENST00000450699 704 ntBASIC16.85■□□□□ 0.29
CDH6P55285 AC098859.1-201ENST00000502915 1238 ntBASIC16.85■□□□□ 0.29
CDH6P55285 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.85■□□□□ 0.29
CDH6P55285 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 AC243562.1-201ENST00000560672 389 ntBASIC16.85■□□□□ 0.29
CDH6P55285 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 SPDYE9P-201ENST00000570642 692 ntBASIC16.85■□□□□ 0.29
CDH6P55285 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.85■□□□□ 0.29
CDH6P55285 AC026120.1-201ENST00000611536 926 ntBASIC16.85■□□□□ 0.29
CDH6P55285 SPDYE10P-202ENST00000612005 668 ntBASIC16.85■□□□□ 0.29
CDH6P55285 SPDYE8P-202ENST00000612377 668 ntBASIC16.85■□□□□ 0.29
CDH6P55285 SPTSSB-204ENST00000617024 1292 ntBASIC16.85■□□□□ 0.29
CDH6P55285 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 AP005117.1-202ENST00000581724 1908 ntBASIC16.85■□□□□ 0.29
CDH6P55285 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 FOXO1B-201ENST00000504678 1527 ntBASIC16.85■□□□□ 0.29
CDH6P55285 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDH6P55285 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.85■□□□□ 0.29
CDH6P55285 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.85■□□□□ 0.29
CDH6P55285 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 AC105917.1-201ENST00000506637 2539 ntBASIC16.84■□□□□ 0.29
CDH6P55285 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 ALG1L5P-201ENST00000482043 771 ntBASIC16.84■□□□□ 0.29
CDH6P55285 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.84■□□□□ 0.29
CDH6P55285 KRT8P48-201ENST00000515599 1220 ntBASIC16.84■□□□□ 0.29
CDH6P55285 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CDH6P55285 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
CDH6P55285 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.84■□□□□ 0.29
CDH6P55285 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDH6P55285 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CDH6P55285 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.83■□□□□ 0.29
CDH6P55285 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CDH6P55285 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.83■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms