Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.99■□□□□ 0.31
COL4A4P53420 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A4P53420 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.99■□□□□ 0.31
COL4A4P53420 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A4P53420 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL4A4P53420 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 CYP2T1P-202ENST00000641596 2535 ntBASIC16.99■□□□□ 0.31
COL4A4P53420 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A4P53420 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A4P53420 U82695.1-201ENST00000635752 1889 ntBASIC16.99■□□□□ 0.31
COL4A4P53420 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A4P53420 AL118508.1-201ENST00000613502 2345 ntBASIC16.99■□□□□ 0.31
COL4A4P53420 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 PCDHA14-201ENST00000506751 2298 ntBASIC16.98■□□□□ 0.31
COL4A4P53420 AC006449.6-201ENST00000612330 2296 ntBASIC16.98■□□□□ 0.31
COL4A4P53420 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 SLC25A24P2-201ENST00000415059 510 ntBASIC16.98■□□□□ 0.31
COL4A4P53420 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A4P53420 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 AC005622.1-201ENST00000636801 1703 ntBASIC16.98■□□□□ 0.31
COL4A4P53420 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A4P53420 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL4A4P53420 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL4A4P53420 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.98■□□□□ 0.31
COL4A4P53420 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL4A4P53420 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL4A4P53420 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 FO393414.2-201ENST00000405153 598 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 AC016694.1-201ENST00000434179 700 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 RPL13P2-201ENST00000440687 659 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 MTX1P1-201ENST00000440904 838 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 AC091804.1-201ENST00000486888 567 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL4A4P53420 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 BAATP1-201ENST00000412284 1225 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 AC134915.1-201ENST00000426461 574 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 KRT18P64-201ENST00000434946 1219 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 TARDBPP1-201ENST00000442013 1203 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 AC104306.2-201ENST00000451877 341 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.97■□□□□ 0.31
COL4A4P53420 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.97■□□□□ 0.31
COL4A4P53420 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 AC106872.11-201ENST00000605838 421 ntBASIC16.97■□□□□ 0.31
COL4A4P53420 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.97■□□□□ 0.31
COL4A4P53420 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL4A4P53420 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
COL4A4P53420 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms