Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
COL5A3P25940 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.92■□□□□ 0.78
COL5A3P25940 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 AC018470.1-201ENST00000624790 3129 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 AC004898.1-201ENST00000451057 766 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 HIST2H2BC-201ENST00000498492 580 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 CHMP4BP1-201ENST00000556017 588 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.91■□□□□ 0.78
COL5A3P25940 AC006453.4-201ENST00000636949 1252 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC19.91■□□□□ 0.78
COL5A3P25940 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL5A3P25940 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.91■□□□□ 0.78
COL5A3P25940 ALOX12P2-203ENST00000570921 1945 ntBASIC19.91■□□□□ 0.78
COL5A3P25940 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.9■□□□□ 0.78
COL5A3P25940 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL5A3P25940 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.9■□□□□ 0.78
COL5A3P25940 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 BTBD6P1-201ENST00000412176 1267 ntBASIC19.9■□□□□ 0.78
COL5A3P25940 HOMER2P2-201ENST00000451621 847 ntBASIC19.9■□□□□ 0.78
COL5A3P25940 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.9■□□□□ 0.78
COL5A3P25940 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.9■□□□□ 0.78
COL5A3P25940 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 KRT8P35-201ENST00000483942 1338 ntBASIC19.9■□□□□ 0.78
COL5A3P25940 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
COL5A3P25940 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.9■□□□□ 0.78
COL5A3P25940 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.9■□□□□ 0.78
COL5A3P25940 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
COL5A3P25940 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.9■□□□□ 0.78
COL5A3P25940 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.9■□□□□ 0.78
COL5A3P25940 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.9■□□□□ 0.78
COL5A3P25940 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL5A3P25940 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.89■□□□□ 0.78
COL5A3P25940 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL5A3P25940 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
COL5A3P25940 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL5A3P25940 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
COL5A3P25940 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.89■□□□□ 0.78
COL5A3P25940 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
COL5A3P25940 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
COL5A3P25940 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 RAC2-202ENST00000401529 569 ntTSL 4 BASIC19.89■□□□□ 0.77
COL5A3P25940 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.89■□□□□ 0.77
COL5A3P25940 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.89■□□□□ 0.77
COL5A3P25940 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.89■□□□□ 0.77
COL5A3P25940 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.89■□□□□ 0.77
COL5A3P25940 AC138028.6-201ENST00000616106 1482 ntBASIC19.89■□□□□ 0.77
COL5A3P25940 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 AHCYP2-201ENST00000430630 1300 ntBASIC19.89■□□□□ 0.77
COL5A3P25940 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.89■□□□□ 0.77
COL5A3P25940 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL5A3P25940 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms