Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 TNRC18P2-201ENST00000417666 2714 ntBASIC18.67■□□□□ 0.58
LIG1P18858 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 AC025580.3-201ENST00000617932 1424 ntBASIC18.67■□□□□ 0.58
LIG1P18858 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIG1P18858 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.67■□□□□ 0.58
LIG1P18858 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LIG1P18858 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.67■□□□□ 0.58
LIG1P18858 AC096734.2-201ENST00000562054 433 ntBASIC18.67■□□□□ 0.58
LIG1P18858 AC002347.1-201ENST00000569543 541 ntBASIC18.67■□□□□ 0.58
LIG1P18858 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
LIG1P18858 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.67■□□□□ 0.58
LIG1P18858 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.67■□□□□ 0.58
LIG1P18858 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
LIG1P18858 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
LIG1P18858 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIG1P18858 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
LIG1P18858 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG1P18858 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LIG1P18858 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
LIG1P18858 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIG1P18858 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.66■□□□□ 0.58
LIG1P18858 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIG1P18858 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.66■□□□□ 0.58
LIG1P18858 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.66■□□□□ 0.58
LIG1P18858 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 ACTL9-202ENST00000612068 1252 ntBASIC18.66■□□□□ 0.58
LIG1P18858 AC008677.1-201ENST00000519230 1561 ntBASIC18.66■□□□□ 0.58
LIG1P18858 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG1P18858 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG1P18858 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIG1P18858 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIG1P18858 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIG1P18858 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.65■□□□□ 0.58
LIG1P18858 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 YBX2P1-201ENST00000394192 760 ntBASIC18.65■□□□□ 0.58
LIG1P18858 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.65■□□□□ 0.58
LIG1P18858 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 FAM185BP-201ENST00000443595 716 ntBASIC18.65■□□□□ 0.58
LIG1P18858 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIG1P18858 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 KRT19P2-202ENST00000557173 1012 ntBASIC18.65■□□□□ 0.58
LIG1P18858 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.65■□□□□ 0.58
LIG1P18858 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.65■□□□□ 0.58
LIG1P18858 AC023141.13-201ENST00000604991 943 ntBASIC18.65■□□□□ 0.58
LIG1P18858 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG1P18858 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG1P18858 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms