Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC138028.4-201ENST00000564984 1845 ntBASIC16.43■□□□□ 0.22
COL6A3P12111 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.43■□□□□ 0.22
COL6A3P12111 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL6A3P12111 DPM3-202ENST00000368399 517 ntBASIC16.43■□□□□ 0.22
COL6A3P12111 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.43■□□□□ 0.22
COL6A3P12111 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A3P12111 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A3P12111 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A3P12111 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A3P12111 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A3P12111 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A3P12111 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A3P12111 AL031731.1-201ENST00000642131 2094 ntBASIC16.43■□□□□ 0.22
COL6A3P12111 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A3P12111 AC006277.1-201ENST00000624348 1610 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL6A3P12111 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 KRT18P64-201ENST00000434946 1219 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 AC011247.3-201ENST00000603297 438 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A3P12111 AC244157.2-201ENST00000616239 1006 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 AC004923.1-202ENST00000642106 209 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 TBC1D3J-201ENST00000620719 1426 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A3P12111 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A3P12111 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A3P12111 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A3P12111 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 MARK2P5-201ENST00000507649 634 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 DUT-207ENST00000559416 635 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 AL031713.1-201ENST00000564813 661 ntBASIC16.42■□□□□ 0.22
COL6A3P12111 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A3P12111 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A3P12111 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A3P12111 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 SLC25A1P3-201ENST00000395415 828 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL6A3P12111 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 IGHEP1-201ENST00000521393 651 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 AC084262.1-201ENST00000567818 751 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
COL6A3P12111 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL6A3P12111 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL6A3P12111 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL6A3P12111 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 AC024293.1-201ENST00000467930 498 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 AC005740.2-201ENST00000511085 419 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 AC015910.1-201ENST00000579400 975 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.41■□□□□ 0.22
COL6A3P12111 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 U82695.1-201ENST00000635752 1889 ntBASIC16.41■□□□□ 0.22
COL6A3P12111 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A3P12111 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL6A3P12111 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms