Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXD4P09016 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.73□□□□□ -0.05
HOXD4P09016 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.73□□□□□ -0.05
HOXD4P09016 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.73□□□□□ -0.05
HOXD4P09016 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 AL390754.1-201ENST00000619088 582 ntBASIC14.73□□□□□ -0.05
HOXD4P09016 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.73□□□□□ -0.05
HOXD4P09016 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 AC092384.3-202ENST00000564646 2873 ntBASIC14.73□□□□□ -0.05
HOXD4P09016 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXD4P09016 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HOXD4P09016 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXD4P09016 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HOXD4P09016 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXD4P09016 OR6D1P-203ENST00000641209 4860 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HOXD4P09016 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXD4P09016 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXD4P09016 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HOXD4P09016 AC104581.4-201ENST00000623126 3052 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXD4P09016 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HOXD4P09016 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 GK-202ENST00000378941 458 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXD4P09016 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXD4P09016 GAPDHP21-201ENST00000450301 1010 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 HLA-V-204ENST00000476601 1289 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXD4P09016 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXD4P09016 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXD4P09016 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXD4P09016 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HOXD4P09016 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXD4P09016 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 AC144831.1-201ENST00000573312 2656 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
HOXD4P09016 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 AC006449.5-201ENST00000610658 2098 ntBASIC14.72□□□□□ -0.05
HOXD4P09016 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXD4P09016 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 AC073439.1-201ENST00000624121 1774 ntBASIC14.71□□□□□ -0.05
HOXD4P09016 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HOXD4P09016 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.71□□□□□ -0.05
HOXD4P09016 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.71□□□□□ -0.05
HOXD4P09016 AC027369.6-201ENST00000525520 931 ntBASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms