Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 KRT18P28-201ENST00000453838 1332 ntBASIC15.23■□□□□ 0.03
LDB3O75112 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
LDB3O75112 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
LDB3O75112 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.23■□□□□ 0.03
LDB3O75112 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 AC093028.1-201ENST00000622998 982 ntBASIC15.23■□□□□ 0.03
LDB3O75112 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
LDB3O75112 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
LDB3O75112 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 AC008677.1-201ENST00000519230 1561 ntBASIC15.23■□□□□ 0.03
LDB3O75112 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
LDB3O75112 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.23■□□□□ 0.03
LDB3O75112 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.22■□□□□ 0.03
LDB3O75112 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 AC010491.1-201ENST00000563101 2797 ntBASIC15.22■□□□□ 0.03
LDB3O75112 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 AC024909.3-201ENST00000611513 2257 ntBASIC15.22■□□□□ 0.03
LDB3O75112 AP003680.1-201ENST00000598970 3660 ntBASIC15.22■□□□□ 0.03
LDB3O75112 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.22■□□□□ 0.03
LDB3O75112 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.22■□□□□ 0.03
LDB3O75112 MIR4453-201ENST00000584019 89 ntBASIC15.22■□□□□ 0.03
LDB3O75112 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LDB3O75112 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LDB3O75112 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LDB3O75112 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LDB3O75112 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.22■□□□□ 0.03
LDB3O75112 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
LDB3O75112 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.21■□□□□ 0.03
LDB3O75112 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms