Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
SDCBPO00560 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC13.84□□□□□ -0.19
SDCBPO00560 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 PMS2P1-201ENST00000431037 1228 ntBASIC13.84□□□□□ -0.19
SDCBPO00560 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.84□□□□□ -0.19
SDCBPO00560 HNRNPDP1-201ENST00000439535 754 ntBASIC13.84□□□□□ -0.19
SDCBPO00560 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.84□□□□□ -0.19
SDCBPO00560 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 CYP2A7P1-201ENST00000595391 815 ntBASIC13.84□□□□□ -0.19
SDCBPO00560 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 AP001350.2-201ENST00000625104 1094 ntBASIC13.84□□□□□ -0.19
SDCBPO00560 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SDCBPO00560 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SDCBPO00560 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SDCBPO00560 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SDCBPO00560 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.19
SDCBPO00560 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
SDCBPO00560 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SDCBPO00560 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SDCBPO00560 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.83□□□□□ -0.19
SDCBPO00560 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
SDCBPO00560 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
SDCBPO00560 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.83□□□□□ -0.2
SDCBPO00560 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 AL353732.1-201ENST00000569618 1459 ntBASIC13.83□□□□□ -0.2
SDCBPO00560 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 MRPL20P1-201ENST00000400819 433 ntBASIC13.83□□□□□ -0.2
SDCBPO00560 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.83□□□□□ -0.2
SDCBPO00560 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.83□□□□□ -0.2
SDCBPO00560 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.83□□□□□ -0.2
SDCBPO00560 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 AC005412.3-201ENST00000580309 715 ntBASIC13.83□□□□□ -0.2
SDCBPO00560 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.83□□□□□ -0.2
SDCBPO00560 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 AC010654.1-201ENST00000615722 808 ntBASIC13.83□□□□□ -0.2
SDCBPO00560 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 AC148477.8-201ENST00000624298 468 ntBASIC13.83□□□□□ -0.2
SDCBPO00560 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.83□□□□□ -0.2
SDCBPO00560 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SDCBPO00560 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.83□□□□□ -0.2
SDCBPO00560 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms