Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AL031432.2-201ENST00000566714 459 ntBASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AL928711.1-201ENST00000570165 459 ntBASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AC010507.1-201ENST00000633895 436 ntBASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RHBDD3Q9Y3P4 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 RNU1-129P-201ENST00000384064 167 ntBASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AC096734.2-201ENST00000562054 433 ntBASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 U1.21-201ENST00000580816 167 ntBASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RHBDD3Q9Y3P4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RHBDD3Q9Y3P4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms