Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 AC079328.2-201ENST00000561241 3354 ntBASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 CALR4P-201ENST00000431943 946 ntBASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 AC007551.1-201ENST00000457394 519 ntBASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 HTR7P1-202ENST00000624664 4411 ntBASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 KRT8P13-201ENST00000463294 1010 ntBASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 SLC25A47P1-201ENST00000531577 414 ntBASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC30.43■■■□□ 2.46
SHROOM4Q9ULL8 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 PTK7-212ENST00000476760 902 ntTSL 2 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 FAM86HP-204ENST00000513466 959 ntBASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 AL158212.4-201ENST00000624062 1286 ntBASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM4Q9ULL8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 AGGF1P2-201ENST00000426656 2106 ntBASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 MIR4321-201ENST00000592276 80 ntBASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 LINC01144-201ENST00000626198 1710 ntBASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SHROOM4Q9ULL8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHROOM4Q9ULL8 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms