Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 GGT3P-204ENST00000453783 1664 ntBASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 PP12613-201ENST00000424958 2230 ntBASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF541Q9H0D2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AL590640.2-201ENST00000457038 527 ntBASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AC104982.3-201ENST00000581995 514 ntBASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 AC020914.3-201ENST00000594712 304 ntBASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF541Q9H0D2 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AC000095.1-201ENST00000603208 874 ntBASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AL096828.3-201ENST00000615354 462 ntBASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF541Q9H0D2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ACKR1-201ENST00000368121 1240 ntBASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 AC026410.3-201ENST00000514280 936 ntBASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 KRT8P19-201ENST00000551916 1455 ntBASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ZNF541Q9H0D2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms