Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.53■□□□□ 0.4
CCDC42Q96M95 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC42Q96M95 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC42Q96M95 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC42Q96M95 CXCL1P1-201ENST00000502804 216 ntBASIC17.52■□□□□ 0.4
CCDC42Q96M95 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 AL031432.2-201ENST00000566714 459 ntBASIC17.52■□□□□ 0.4
CCDC42Q96M95 AL928711.1-201ENST00000570165 459 ntBASIC17.52■□□□□ 0.4
CCDC42Q96M95 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 IFNL4P1-201ENST00000607083 540 ntBASIC17.52■□□□□ 0.4
CCDC42Q96M95 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 AL645728.2-201ENST00000641974 660 ntBASIC17.52■□□□□ 0.4
CCDC42Q96M95 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC42Q96M95 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.52■□□□□ 0.39
CCDC42Q96M95 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CCDC42Q96M95 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC42Q96M95 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC42Q96M95 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC42Q96M95 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC42Q96M95 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC42Q96M95 AC092850.2-201ENST00000623821 2697 ntBASIC17.52■□□□□ 0.39
CCDC42Q96M95 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC42Q96M95 AC136621.1-201ENST00000624017 2304 ntBASIC17.52■□□□□ 0.39
CCDC42Q96M95 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC42Q96M95 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.51■□□□□ 0.39
CCDC42Q96M95 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 AC020658.6-201ENST00000623564 1870 ntBASIC17.51■□□□□ 0.39
CCDC42Q96M95 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC42Q96M95 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC42Q96M95 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 RPS2P28-201ENST00000314255 741 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC42Q96M95 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 HNRNPDP1-201ENST00000439535 754 ntBASIC17.5■□□□□ 0.39
CCDC42Q96M95 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC42Q96M95 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms