Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 AL662890.1-201ENST00000396818 632 ntBASIC21.65■■□□□ 1.06
NPHP3Q7Z494 FXNP2-201ENST00000411625 547 ntBASIC21.65■■□□□ 1.06
NPHP3Q7Z494 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 RERG-205ENST00000537647 935 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 HNRNPA1P48-202ENST00000565308 961 ntBASIC21.65■■□□□ 1.06
NPHP3Q7Z494 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.65■■□□□ 1.06
NPHP3Q7Z494 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.64■■□□□ 1.06
NPHP3Q7Z494 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.64■■□□□ 1.06
NPHP3Q7Z494 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP3Q7Z494 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.64■■□□□ 1.06
NPHP3Q7Z494 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 MTX1P1-201ENST00000440904 838 ntBASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AC005077.2-201ENST00000449786 690 ntBASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 ADM-202ENST00000524948 584 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 MIR4741-201ENST00000579822 90 ntBASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AC020914.3-201ENST00000594712 304 ntBASIC21.64■■□□□ 1.05
NPHP3Q7Z494 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC21.64■■□□□ 1.05
NPHP3Q7Z494 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP3Q7Z494 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.63■■□□□ 1.05
NPHP3Q7Z494 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AC136604.1-201ENST00000418535 575 ntBASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 KSR1-207ENST00000578981 748 ntTSL 4 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 HCG18-245ENST00000602550 559 ntTSL 4 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AC093813.1-201ENST00000605066 256 ntBASIC21.63■■□□□ 1.05
NPHP3Q7Z494 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AHCYP2-201ENST00000430630 1300 ntBASIC21.63■■□□□ 1.05
NPHP3Q7Z494 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP3Q7Z494 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
NPHP3Q7Z494 NUS1P3-201ENST00000423502 862 ntBASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms