Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A4P53420 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
COL4A4P53420 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A4P53420 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A4P53420 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A4P53420 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
COL4A4P53420 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.31
COL4A4P53420 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.02■□□□□ 0.31
COL4A4P53420 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A4P53420 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
COL4A4P53420 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
COL4A4P53420 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A4P53420 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A4P53420 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A4P53420 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
COL4A4P53420 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A4P53420 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.02■□□□□ 0.31
COL4A4P53420 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.01■□□□□ 0.31
COL4A4P53420 MIR326-201ENST00000362220 95 ntBASIC17.01■□□□□ 0.31
COL4A4P53420 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A4P53420 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A4P53420 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A4P53420 AC005252.2-201ENST00000624630 1141 ntBASIC17.01■□□□□ 0.31
COL4A4P53420 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A4P53420 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17■□□□□ 0.31
COL4A4P53420 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL4A4P53420 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17■□□□□ 0.31
COL4A4P53420 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17■□□□□ 0.31
COL4A4P53420 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
COL4A4P53420 ELK2AP-201ENST00000392510 1007 ntBASIC17■□□□□ 0.31
COL4A4P53420 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17■□□□□ 0.31
COL4A4P53420 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17■□□□□ 0.31
COL4A4P53420 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17■□□□□ 0.31
COL4A4P53420 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17■□□□□ 0.31
COL4A4P53420 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17■□□□□ 0.31
COL4A4P53420 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
COL4A4P53420 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A4P53420 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL4A4P53420 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A4P53420 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.99■□□□□ 0.31
COL4A4P53420 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A4P53420 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A4P53420 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A4P53420 KRT8P13-201ENST00000463294 1010 ntBASIC16.99■□□□□ 0.31
COL4A4P53420 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A4P53420 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms