Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.53■□□□□ 0.08
MSX2P35548 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
MSX2P35548 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.53■□□□□ 0.08
MSX2P35548 AC074051.2-201ENST00000565115 352 ntBASIC15.53■□□□□ 0.08
MSX2P35548 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
MSX2P35548 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 AC092127.1-201ENST00000567093 3455 ntBASIC15.52■□□□□ 0.08
MSX2P35548 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.52■□□□□ 0.08
MSX2P35548 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 DRAXINP1-201ENST00000437611 948 ntBASIC15.52■□□□□ 0.08
MSX2P35548 AP002383.4-201ENST00000442518 975 ntBASIC15.52■□□□□ 0.08
MSX2P35548 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
MSX2P35548 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.52■□□□□ 0.08
MSX2P35548 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.52■□□□□ 0.08
MSX2P35548 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.52■□□□□ 0.08
MSX2P35548 AC091167.2-201ENST00000579581 588 ntBASIC15.52■□□□□ 0.08
MSX2P35548 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.52■□□□□ 0.08
MSX2P35548 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
MSX2P35548 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
MSX2P35548 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.52■□□□□ 0.08
MSX2P35548 CICP23-201ENST00000605013 2741 ntBASIC15.52■□□□□ 0.08
MSX2P35548 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSX2P35548 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSX2P35548 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
MSX2P35548 AC008677.1-201ENST00000519230 1561 ntBASIC15.52■□□□□ 0.07
MSX2P35548 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.52■□□□□ 0.07
MSX2P35548 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.07
MSX2P35548 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.52■□□□□ 0.07
MSX2P35548 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSX2P35548 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.52■□□□□ 0.07
MSX2P35548 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.51■□□□□ 0.07
MSX2P35548 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.51■□□□□ 0.07
MSX2P35548 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.51■□□□□ 0.07
MSX2P35548 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.51■□□□□ 0.07
MSX2P35548 LINC00265-3P-201ENST00000447588 903 ntBASIC15.51■□□□□ 0.07
MSX2P35548 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 PRYP5-201ENST00000451909 266 ntBASIC15.51■□□□□ 0.07
MSX2P35548 SLC25A6P2-201ENST00000497974 877 ntBASIC15.51■□□□□ 0.07
MSX2P35548 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms