Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.75□□□□□ -0.05
HOXD4P09016 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXD4P09016 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.75□□□□□ -0.05
HOXD4P09016 AL353705.2-201ENST00000428243 662 ntBASIC14.75□□□□□ -0.05
HOXD4P09016 AC241585.1-201ENST00000433527 519 ntBASIC14.75□□□□□ -0.05
HOXD4P09016 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXD4P09016 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXD4P09016 LINC02560-201ENST00000596379 459 ntBASIC14.75□□□□□ -0.05
HOXD4P09016 AC008761.3-201ENST00000624803 892 ntBASIC14.75□□□□□ -0.05
HOXD4P09016 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.75□□□□□ -0.05
HOXD4P09016 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HOXD4P09016 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXD4P09016 PAUPAR-201ENST00000630360 2965 ntBASIC14.75□□□□□ -0.05
HOXD4P09016 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HOXD4P09016 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.75□□□□□ -0.05
HOXD4P09016 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HOXD4P09016 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HOXD4P09016 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXD4P09016 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
HOXD4P09016 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 MIR661-201ENST00000384842 89 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
HOXD4P09016 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 UGT1A2P-201ENST00000454886 866 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXD4P09016 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXD4P09016 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXD4P09016 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXD4P09016 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXD4P09016 AC003101.2-201ENST00000612557 442 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 AC020765.3-201ENST00000613051 740 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 AC073592.8-201ENST00000624126 511 ntBASIC14.74□□□□□ -0.05
HOXD4P09016 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXD4P09016 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
HOXD4P09016 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HOXD4P09016 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms