Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SENP6-212ENST00000503501 2041 ntTSL 2-0.07□□□□□ -2.428e-6■■■■■ 107
SF3B1O75533 ERH-204ENST00000557697 167 ntTSL 5-0.47□□□□□ -2.488e-6■■■■■ 107
SF3B1O75533 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.534e-6■■■■■ 106.9
SF3B1O75533 CCND3-221ENST00000514588 490 ntTSL 426.58■■□□□ 1.852e-6■■■■■ 106.9
SF3B1O75533 CCND3-209ENST00000505884 592 ntTSL 420■□□□□ 0.792e-6■■■■■ 106.9
SF3B1O75533 CCND3-214ENST00000511161 579 ntTSL 420■□□□□ 0.792e-6■■■■■ 106.9
SF3B1O75533 CCND3-219ENST00000513956 562 ntTSL 220■□□□□ 0.792e-6■■■■■ 106.9
SF3B1O75533 CCND3-211ENST00000508143 574 ntTSL 420■□□□□ 0.792e-6■■■■■ 106.9
SF3B1O75533 CCND3-208ENST00000505672 932 ntTSL 219.72■□□□□ 0.752e-6■■■■■ 106.9
SF3B1O75533 CCND3-206ENST00000502771 544 ntTSL 416.56■□□□□ 0.242e-6■■■■■ 106.9
SF3B1O75533 CCND3-220ENST00000514382 476 ntTSL 414.87□□□□□ -0.032e-6■■■■■ 106.9
SF3B1O75533 HK1-202ENST00000359426 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.614e-6■■■■■ 106.9
SF3B1O75533 HK1-201ENST00000298649 3596 ntTSL 5 BASIC10.92□□□□□ -0.664e-6■■■■■ 106.9
SF3B1O75533 HK1-206ENST00000448642 3868 ntTSL 5 BASIC10.02□□□□□ -0.814e-6■■■■■ 106.9
SF3B1O75533 HK1-203ENST00000360289 3961 ntTSL 5 BASIC8.83□□□□□ -14e-6■■■■■ 106.9
SF3B1O75533 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.852e-6■■■■■ 106.8
SF3B1O75533 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.562e-6■■■■■ 106.8
SF3B1O75533 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-7■■■■■ 106.8
SF3B1O75533 UGGT1-202ENST00000376723 6682 ntTSL 1 (best)15.75■□□□□ 0.112e-7■■■■■ 106.8
SF3B1O75533 CRADD-209ENST00000551065 1293 ntTSL 215.69■□□□□ 0.12e-6■■■■■ 106.8
SF3B1O75533 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.042e-7■■■■■ 106.8
SF3B1O75533 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.18■□□□□ 0.022e-6■■■■■ 106.8
SF3B1O75533 CRADD-211ENST00000552983 839 ntTSL 5 BASIC9.87□□□□□ -0.832e-6■■■■■ 106.8
SF3B1O75533 CRADD-206ENST00000549615 514 ntTSL 39.87□□□□□ -0.832e-6■■■■■ 106.8
SF3B1O75533 CRADD-210ENST00000552033 622 ntTSL 3 BASIC7.91□□□□□ -1.142e-6■■■■■ 106.8
SF3B1O75533 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.93■■□□□ 1.743e-6■■■■■ 106.8
SF3B1O75533 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.333e-6■■■■■ 106.8
SF3B1O75533 SLC25A21-205ENST00000557611 591 ntTSL 514.26□□□□□ -0.132e-6■■■■■ 106.8
SF3B1O75533 MGAT1-213ENST00000506889 1104 ntTSL 225.36■■□□□ 1.656e-6■■■■■ 106.8
SF3B1O75533 MGAT1-223ENST00000514283 619 ntTSL 221.85■■□□□ 1.096e-6■■■■■ 106.8
SF3B1O75533 MGAT1-224ENST00000514438 607 ntTSL 421.85■■□□□ 1.096e-6■■■■■ 106.8
SF3B1O75533 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.976e-6■■■■■ 106.8
SF3B1O75533 MGAT1-222ENST00000513431 555 ntTSL 219.8■□□□□ 0.766e-6■■■■■ 106.8
SF3B1O75533 MGAT1-206ENST00000502678 693 ntTSL 419.24■□□□□ 0.676e-6■■■■■ 106.8
SF3B1O75533 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.386e-6■■■■■ 106.8
SF3B1O75533 MGAT1-220ENST00000512695 549 ntTSL 417.21■□□□□ 0.356e-6■■■■■ 106.8
SF3B1O75533 MGAT1-211ENST00000506269 564 ntTSL 416.78■□□□□ 0.286e-6■■■■■ 106.8
SF3B1O75533 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.16e-6■■■■■ 106.8
SF3B1O75533 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.26e-6■■■■■ 106.8
SF3B1O75533 MGAT1-207ENST00000504385 540 ntTSL 412.37□□□□□ -0.436e-6■■■■■ 106.8
SF3B1O75533 MGAT1-225ENST00000514760 613 ntTSL 37.62□□□□□ -1.196e-6■■■■■ 106.8
SF3B1O75533 MAPK12-209ENST00000497036 6248 ntTSL 218.72■□□□□ 0.593e-7■■■■■ 106.8
SF3B1O75533 CHD4-214ENST00000545942 1317 ntTSL 1 (best)25.02■■□□□ 1.62e-6■■■■■ 106.8
SF3B1O75533 POLR2H-201ENST00000412877 836 ntTSL 224.07■■□□□ 1.441e-6■■■■■ 106.8
SF3B1O75533 RPA2-205ENST00000444045 682 ntTSL 515.71■□□□□ 0.111e-6■■■■■ 106.8
SF3B1O75533 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -04e-6■■■■■ 106.8
SF3B1O75533 ADAM10-212ENST00000558004 587 ntTSL 519.55■□□□□ 0.725e-6■■■■■ 106.7
SF3B1O75533 ADAM10-213ENST00000558733 995 ntTSL 316.19■□□□□ 0.185e-6■■■■■ 106.7
SF3B1O75533 ADAM10-204ENST00000439637 601 ntTSL 315.09■□□□□ 0.015e-6■■■■■ 106.7
SF3B1O75533 ADAM10-214ENST00000559053 541 ntTSL 410.05□□□□□ -0.85e-6■■■■■ 106.7
SF3B1O75533 ADAM10-211ENST00000497846 647 ntTSL 47.56□□□□□ -1.25e-6■■■■■ 106.7
SF3B1O75533 TANGO2-222ENST00000479679 894 ntTSL 226.24■■□□□ 1.792e-6■■■■■ 106.7
SF3B1O75533 TANGO2-209ENST00000432198 585 ntTSL 413.28□□□□□ -0.282e-6■■■■■ 106.7
SF3B1O75533 GALNT2-205ENST00000494106 692 ntTSL 515.01□□□□□ -0.014e-6■■■■■ 106.6
SF3B1O75533 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.76■□□□□ 0.752e-6■■■■■ 106.6
SF3B1O75533 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.32e-6■■■■■ 106.6
SF3B1O75533 PHKB-217ENST00000570047 797 ntTSL 311.35□□□□□ -0.592e-6■■■■■ 106.5
SF3B1O75533 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.66■□□□□ 0.262e-6■■■■■ 106.5
SF3B1O75533 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.98□□□□□ -0.172e-6■■■■■ 106.5
SF3B1O75533 ACACA-245ENST00000619546 5315 ntTSL 1 (best)9.31□□□□□ -0.923e-7■■■■■ 106.5
SF3B1O75533 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.67□□□□□ -1.183e-7■■■■■ 106.5
SF3B1O75533 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.87□□□□□ -1.313e-7■■■■■ 106.5
SF3B1O75533 ANKRD11-206ENST00000562275 2762 ntTSL 514.21□□□□□ -0.136e-7■■■■■ 106.5
SF3B1O75533 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.023e-6■■■■■ 106.5
SF3B1O75533 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.073e-6■■■■■ 106.5
SF3B1O75533 XXYLT1-206ENST00000455281 557 ntTSL 421.05■□□□□ 0.966e-8■■■■■ 106.4
SF3B1O75533 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.522e-6■■■■■ 106.4
SF3B1O75533 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.2□□□□□ -0.142e-6■■■■■ 106.4
SF3B1O75533 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.483e-6■■■■■ 106.4
SF3B1O75533 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.56■□□□□ 0.562e-6■■■■■ 106.3
SF3B1O75533 HSPA4-204ENST00000615899 2204 ntTSL 5 BASIC13.52□□□□□ -0.252e-6■■■■■ 106.3
SF3B1O75533 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.422e-6■■■■■ 106.3
SF3B1O75533 RAB22A-202ENST00000488949 1032 ntTSL 327.16■■□□□ 1.945e-7■■■■■ 106.3
SF3B1O75533 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.68■■□□□ 1.543e-6■■■■■ 106.3
SF3B1O75533 TGIF2-206ENST00000560025 923 ntTSL 320.13■□□□□ 0.812e-7■■■■■ 106.3
SF3B1O75533 AGRN-202ENST00000419249 861 ntTSL 319.93■□□□□ 0.783e-10■■■■■ 106.3
SF3B1O75533 STXBP3-204ENST00000483586 561 ntTSL 218.25■□□□□ 0.513e-10■■■■■ 106.3
SF3B1O75533 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.453e-10■■■■■ 106.3
SF3B1O75533 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.423e-10■■■■■ 106.3
SF3B1O75533 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.342e-7■■■■■ 106.3
SF3B1O75533 TGIF2-204ENST00000558028 638 ntTSL 216.22■□□□□ 0.192e-7■■■■■ 106.3
SF3B1O75533 SNX6-203ENST00000555416 1215 ntTSL 1 (best)14.92□□□□□ -0.025e-7■■■■■ 106.3
SF3B1O75533 TGIF2-203ENST00000557885 659 ntTSL 214.5□□□□□ -0.092e-7■■■■■ 106.3
SF3B1O75533 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.24e-6■■■■■ 106.3
SF3B1O75533 SNX6-209ENST00000557265 725 ntTSL 313.65□□□□□ -0.225e-7■■■■■ 106.3
SF3B1O75533 TGIF2-207ENST00000561398 797 ntTSL 313.25□□□□□ -0.292e-7■■■■■ 106.3
SF3B1O75533 FAM13A-219ENST00000512339 1511 ntTSL 511.34□□□□□ -0.593e-6■■■■■ 106.3
SF3B1O75533 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC11.33□□□□□ -0.64e-6■■■■■ 106.3
SF3B1O75533 SNX6-208ENST00000556712 851 ntTSL 511.33□□□□□ -0.65e-7■■■■■ 106.3
SF3B1O75533 TGIF2-208ENST00000611732 3344 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.82e-7■■■■■ 106.3
SF3B1O75533 TGIF2-205ENST00000558465 785 ntTSL 39.94□□□□□ -0.822e-7■■■■■ 106.3
SF3B1O75533 PGD-210ENST00000498356 790 ntTSL 37.46□□□□□ -1.223e-6■■■■■ 106.3
SF3B1O75533 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.317e-6■■■■■ 106.2
SF3B1O75533 ARHGAP17-207ENST00000571480 645 ntTSL 417.7■□□□□ 0.428e-7■■■■■ 106.2
SF3B1O75533 ARHGAP17-203ENST00000455311 810 ntTSL 59.82□□□□□ -0.848e-7■■■■■ 106.2
SF3B1O75533 ARHGAP17-212ENST00000573625 602 ntTSL 39.38□□□□□ -0.918e-7■■■■■ 106.2
SF3B1O75533 STIM1-213ENST00000532610 524 ntTSL 411.42□□□□□ -0.583e-6■■■■■ 106.2
SF3B1O75533 STIM1-211ENST00000530554 552 ntTSL 47.14□□□□□ -1.273e-6■■■■■ 106.2
SF3B1O75533 STIM1-214ENST00000532919 580 ntTSL 46.57□□□□□ -1.363e-6■■■■■ 106.2
SF3B1O75533 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC8.95□□□□□ -0.983e-6■■■■■ 106.2
Retrieved 100 of 46,956 protein–RNA pairs in 1491.8 ms