Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
RNF38Q9H0F5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
RNF38Q9H0F5 FOXO3B-201ENST00000395675 1928 ntBASIC24.63■■□□□ 1.53
RNF38Q9H0F5 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 AL356441.2-201ENST00000443009 864 ntBASIC24.62■■□□□ 1.53
RNF38Q9H0F5 MIR4281-201ENST00000580852 62 ntBASIC24.62■■□□□ 1.53
RNF38Q9H0F5 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
RNF38Q9H0F5 AC097639.1-201ENST00000565519 1891 ntBASIC24.62■■□□□ 1.53
RNF38Q9H0F5 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF38Q9H0F5 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF38Q9H0F5 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF38Q9H0F5 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RNF38Q9H0F5 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF38Q9H0F5 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RNF38Q9H0F5 AC021242.3-201ENST00000607598 1377 ntBASIC24.6■■□□□ 1.53
RNF38Q9H0F5 AC131212.1-201ENST00000613771 668 ntBASIC24.6■■□□□ 1.53
RNF38Q9H0F5 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF38Q9H0F5 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RNF38Q9H0F5 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
RNF38Q9H0F5 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RNF38Q9H0F5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.59■■□□□ 1.53
RNF38Q9H0F5 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.59■■□□□ 1.53
RNF38Q9H0F5 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
RNF38Q9H0F5 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RNF38Q9H0F5 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 AC011551.1-201ENST00000614101 683 ntBASIC24.57■■□□□ 1.52
RNF38Q9H0F5 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.57■■□□□ 1.52
RNF38Q9H0F5 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 UNC93B8-201ENST00000511903 705 ntBASIC24.56■■□□□ 1.52
RNF38Q9H0F5 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RNF38Q9H0F5 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
RNF38Q9H0F5 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.54■■□□□ 1.52
RNF38Q9H0F5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.54■■□□□ 1.52
RNF38Q9H0F5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.54■■□□□ 1.52
RNF38Q9H0F5 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
RNF38Q9H0F5 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.54■■□□□ 1.52
RNF38Q9H0F5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.53■■□□□ 1.52
RNF38Q9H0F5 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
RNF38Q9H0F5 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.52■■□□□ 1.52
RNF38Q9H0F5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
RNF38Q9H0F5 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
RNF38Q9H0F5 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.5■■□□□ 1.51
RNF38Q9H0F5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms