Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.54■□□□□ 0.4
PRKDCP78527 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKDCP78527 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKDCP78527 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKDCP78527 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.53■□□□□ 0.4
PRKDCP78527 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC17.53■□□□□ 0.4
PRKDCP78527 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
PRKDCP78527 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.53■□□□□ 0.4
PRKDCP78527 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PRKDCP78527 IRS3P-201ENST00000223076 1006 ntBASIC17.53■□□□□ 0.4
PRKDCP78527 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
PRKDCP78527 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKDCP78527 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PRKDCP78527 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKDCP78527 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PRKDCP78527 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKDCP78527 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.52■□□□□ 0.4
PRKDCP78527 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.52■□□□□ 0.4
PRKDCP78527 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PRKDCP78527 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PRKDCP78527 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC17.52■□□□□ 0.39
PRKDCP78527 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PRKDCP78527 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PRKDCP78527 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC17.52■□□□□ 0.39
PRKDCP78527 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKDCP78527 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.51■□□□□ 0.39
PRKDCP78527 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PRKDCP78527 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PRKDCP78527 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKDCP78527 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKDCP78527 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PRKDCP78527 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.51■□□□□ 0.39
PRKDCP78527 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
PRKDCP78527 ST7-AS1-201ENST00000456775 1889 ntBASIC17.51■□□□□ 0.39
PRKDCP78527 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PRKDCP78527 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.5■□□□□ 0.39
PRKDCP78527 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.5■□□□□ 0.39
PRKDCP78527 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC17.5■□□□□ 0.39
PRKDCP78527 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PRKDCP78527 AP002414.2-202ENST00000590929 1450 ntBASIC17.5■□□□□ 0.39
PRKDCP78527 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PRKDCP78527 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PRKDCP78527 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PRKDCP78527 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PRKDCP78527 AL137784.2-201ENST00000607332 1000 ntBASIC17.49■□□□□ 0.39
PRKDCP78527 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PRKDCP78527 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.49■□□□□ 0.39
PRKDCP78527 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PRKDCP78527 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PRKDCP78527 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PRKDCP78527 KRT18P5-201ENST00000436075 1291 ntBASIC17.49■□□□□ 0.39
PRKDCP78527 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.48■□□□□ 0.39
PRKDCP78527 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.48■□□□□ 0.39
PRKDCP78527 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PRKDCP78527 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PRKDCP78527 RAP2CP1-201ENST00000605103 478 ntBASIC17.48■□□□□ 0.39
PRKDCP78527 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PRKDCP78527 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKDCP78527 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PRKDCP78527 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC17.47■□□□□ 0.39
PRKDCP78527 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PRKDCP78527 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC17.47■□□□□ 0.39
PRKDCP78527 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.47■□□□□ 0.39
PRKDCP78527 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PRKDCP78527 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PRKDCP78527 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKDCP78527 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PRKDCP78527 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKDCP78527 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKDCP78527 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKDCP78527 SRD5A1P1-201ENST00000442297 786 ntBASIC17.46■□□□□ 0.39
PRKDCP78527 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
PRKDCP78527 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.46■□□□□ 0.39
PRKDCP78527 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PRKDCP78527 AC066615.1-201ENST00000640911 628 ntBASIC17.46■□□□□ 0.39
PRKDCP78527 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PRKDCP78527 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L2-201ENST00000561772 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L6-201ENST00000626483 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L1-201ENST00000627662 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L8-201ENST00000629013 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L3-201ENST00000630187 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L7-201ENST00000630678 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 DUX4L5-201ENST00000630834 1275 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKDCP78527 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.45■□□□□ 0.38
PRKDCP78527 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKDCP78527 AC027682.1-201ENST00000562846 899 ntBASIC17.45■□□□□ 0.38
PRKDCP78527 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKDCP78527 YBX1P1-201ENST00000445822 960 ntBASIC17.44■□□□□ 0.38
PRKDCP78527 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.44■□□□□ 0.38
PRKDCP78527 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC17.44■□□□□ 0.38
PRKDCP78527 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKDCP78527 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKDCP78527 SYT6-210ENST00000641643 1587 ntBASIC17.44■□□□□ 0.38
PRKDCP78527 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PRKDCP78527 MIR4767-201ENST00000582827 78 ntBASIC17.44■□□□□ 0.38
PRKDCP78527 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.44■□□□□ 0.38
PRKDCP78527 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms