Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLRN1P58418 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN1P58418 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN1P58418 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN1P58418 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.02■□□□□ 0.96
CLRN1P58418 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.02■□□□□ 0.96
CLRN1P58418 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLRN1P58418 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.02■□□□□ 0.96
CLRN1P58418 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.02■□□□□ 0.96
CLRN1P58418 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.01■□□□□ 0.95
CLRN1P58418 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLRN1P58418 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CLRN1P58418 SPCS2P3-201ENST00000500401 656 ntBASIC21.01■□□□□ 0.95
CLRN1P58418 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.01■□□□□ 0.95
CLRN1P58418 MIR6765-201ENST00000614092 87 ntBASIC21.01■□□□□ 0.95
CLRN1P58418 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CLRN1P58418 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLRN1P58418 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLRN1P58418 DUX4L9-201ENST00000449051 1259 ntBASIC21■□□□□ 0.95
CLRN1P58418 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLRN1P58418 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLRN1P58418 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLRN1P58418 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN1P58418 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN1P58418 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN1P58418 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN1P58418 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLRN1P58418 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLRN1P58418 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLRN1P58418 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLRN1P58418 RPS2P7-201ENST00000447334 885 ntBASIC20.98■□□□□ 0.95
CLRN1P58418 NTF6A-201ENST00000591175 560 ntBASIC20.98■□□□□ 0.95
CLRN1P58418 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CLRN1P58418 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CLRN1P58418 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLRN1P58418 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLRN1P58418 KRT18P60-201ENST00000312876 1297 ntBASIC20.97■□□□□ 0.95
CLRN1P58418 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLRN1P58418 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.97■□□□□ 0.95
CLRN1P58418 AC129492.7-201ENST00000622992 756 ntBASIC20.97■□□□□ 0.95
CLRN1P58418 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLRN1P58418 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLRN1P58418 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.97■□□□□ 0.95
CLRN1P58418 AC135731.1-201ENST00000569415 2548 ntBASIC20.97■□□□□ 0.95
CLRN1P58418 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CLRN1P58418 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLRN1P58418 AP003733.4-201ENST00000623785 1697 ntBASIC20.96■□□□□ 0.95
CLRN1P58418 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.96■□□□□ 0.95
CLRN1P58418 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CLRN1P58418 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CLRN1P58418 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLRN1P58418 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.96■□□□□ 0.95
CLRN1P58418 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLRN1P58418 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN1P58418 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN1P58418 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN1P58418 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN1P58418 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN1P58418 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CLRN1P58418 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.95■□□□□ 0.94
CLRN1P58418 FOXO3B-201ENST00000395675 1928 ntBASIC20.95■□□□□ 0.94
CLRN1P58418 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN1P58418 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.95■□□□□ 0.94
CLRN1P58418 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.95■□□□□ 0.94
CLRN1P58418 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
CLRN1P58418 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLRN1P58418 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
CLRN1P58418 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN1P58418 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN1P58418 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN1P58418 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLRN1P58418 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLRN1P58418 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLRN1P58418 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.92■□□□□ 0.94
CLRN1P58418 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CLRN1P58418 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.92■□□□□ 0.94
CLRN1P58418 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CLRN1P58418 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLRN1P58418 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN1P58418 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN1P58418 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN1P58418 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.91■□□□□ 0.94
CLRN1P58418 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.91■□□□□ 0.94
CLRN1P58418 AC087393.1-201ENST00000582896 145 ntBASIC20.91■□□□□ 0.94
CLRN1P58418 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLRN1P58418 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.91■□□□□ 0.94
CLRN1P58418 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN1P58418 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN1P58418 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN1P58418 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLRN1P58418 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLRN1P58418 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLRN1P58418 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms