Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 HLA-A-202ENST00000376806 1854 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 GAPDHP21-201ENST00000450301 1010 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SDHAP3-202ENST00000515467 728 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 AC010336.2-201ENST00000564226 506 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 AC104794.3-201ENST00000566840 1248 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CTDP1Q9Y5B0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 UBALD1-205ENST00000590891 2641 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 SPDYE19P-201ENST00000338590 713 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 GNAQP1-201ENST00000444815 1067 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 KRT17P7-201ENST00000451704 1104 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 DOC2GP-202ENST00000514950 1163 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 ZNF890P-202ENST00000530367 1156 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CTDP1Q9Y5B0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 RNF216P1-203ENST00000404404 2427 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AC087499.6-201ENST00000411576 835 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 SPDYE17-201ENST00000412399 783 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 POU5F1P6-201ENST00000466990 990 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AL596325.1-201ENST00000563991 1082 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 AC140912.1-201ENST00000577171 1054 ntBASIC18.68■□□□□ 0.58
CTDP1Q9Y5B0 MIR4321-201ENST00000592276 80 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms