Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 AL589739.1-201ENST00000607720 493 ntBASIC16.3■□□□□ 0.2
DKK3Q9UBP4 AL138828.2-201ENST00000615812 383 ntBASIC16.3■□□□□ 0.2
DKK3Q9UBP4 REXO1L8P-201ENST00000604378 1897 ntBASIC16.3■□□□□ 0.2
DKK3Q9UBP4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.3■□□□□ 0.2
DKK3Q9UBP4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 AL118508.1-201ENST00000613502 2345 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 AC241585.1-201ENST00000433527 519 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 BCRP1-201ENST00000444246 691 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 IGHV3-42-201ENST00000520410 361 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 AC027369.6-201ENST00000525520 931 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 AL079307.3-201ENST00000556114 283 ntBASIC16.29■□□□□ 0.2
DKK3Q9UBP4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
DKK3Q9UBP4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 SPDYE17-201ENST00000412399 783 ntBASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AL390754.1-201ENST00000619088 582 ntBASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AJ011932.1-201ENST00000621707 465 ntBASIC16.28■□□□□ 0.2
DKK3Q9UBP4 AL590560.3-201ENST00000623350 461 ntBASIC16.28■□□□□ 0.2
DKK3Q9UBP4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.28■□□□□ 0.2
DKK3Q9UBP4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms