Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PIF1Q9H611 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PIF1Q9H611 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PIF1Q9H611 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.58■□□□□ 0.08
PIF1Q9H611 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.58■□□□□ 0.08
PIF1Q9H611 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.58■□□□□ 0.08
PIF1Q9H611 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.58■□□□□ 0.08
PIF1Q9H611 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.58■□□□□ 0.08
PIF1Q9H611 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.58■□□□□ 0.08
PIF1Q9H611 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.58■□□□□ 0.08
PIF1Q9H611 MTDHP4-201ENST00000600287 670 ntBASIC15.58■□□□□ 0.08
PIF1Q9H611 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 AL139288.1-201ENST00000623748 933 ntBASIC15.58■□□□□ 0.08
PIF1Q9H611 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.58■□□□□ 0.08
PIF1Q9H611 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PIF1Q9H611 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.58■□□□□ 0.08
PIF1Q9H611 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.57■□□□□ 0.08
PIF1Q9H611 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 AC005622.1-201ENST00000636801 1703 ntBASIC15.57■□□□□ 0.08
PIF1Q9H611 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.57■□□□□ 0.08
PIF1Q9H611 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.57■□□□□ 0.08
PIF1Q9H611 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 SART3-203ENST00000546611 1184 ntBASIC15.57■□□□□ 0.08
PIF1Q9H611 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 REXO1L6P-202ENST00000619970 1078 ntBASIC15.57■□□□□ 0.08
PIF1Q9H611 AC004706.3-202ENST00000621574 984 ntBASIC15.57■□□□□ 0.08
PIF1Q9H611 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PIF1Q9H611 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 AC006504.4-201ENST00000592118 1568 ntBASIC15.57■□□□□ 0.08
PIF1Q9H611 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.57■□□□□ 0.08
PIF1Q9H611 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PIF1Q9H611 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PIF1Q9H611 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms