Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL12A1Q99715 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL12A1Q99715 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
COL12A1Q99715 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.92□□□□□ -0.18
COL12A1Q99715 PLS3-210ENST00000626746 216 ntTSL 4 BASIC13.92□□□□□ -0.18
COL12A1Q99715 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL12A1Q99715 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 AL512652.2-201ENST00000625156 1716 ntBASIC13.91□□□□□ -0.18
COL12A1Q99715 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.91□□□□□ -0.18
COL12A1Q99715 RN7SL774P-201ENST00000577467 290 ntBASIC13.91□□□□□ -0.18
COL12A1Q99715 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.91□□□□□ -0.18
COL12A1Q99715 AC132192.2-201ENST00000596206 1147 ntBASIC13.91□□□□□ -0.18
COL12A1Q99715 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 AC009084.3-201ENST00000623356 437 ntBASIC13.91□□□□□ -0.18
COL12A1Q99715 CYP4F24P-201ENST00000586049 1580 ntBASIC13.91□□□□□ -0.18
COL12A1Q99715 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.91□□□□□ -0.18
COL12A1Q99715 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
COL12A1Q99715 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL12A1Q99715 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.91□□□□□ -0.18
COL12A1Q99715 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
COL12A1Q99715 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.9□□□□□ -0.18
COL12A1Q99715 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 MIR1202-201ENST00000408529 83 ntBASIC13.9□□□□□ -0.18
COL12A1Q99715 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC13.9□□□□□ -0.18
COL12A1Q99715 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.9□□□□□ -0.18
COL12A1Q99715 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 AC008132.1-202ENST00000342005 1389 ntBASIC13.9□□□□□ -0.18
COL12A1Q99715 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
COL12A1Q99715 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL12A1Q99715 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC13.9□□□□□ -0.18
COL12A1Q99715 AP003392.6-201ENST00000607709 325 ntBASIC13.9□□□□□ -0.18
COL12A1Q99715 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
COL12A1Q99715 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL12A1Q99715 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL12A1Q99715 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
COL12A1Q99715 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL12A1Q99715 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL12A1Q99715 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL12A1Q99715 ACTG1P2-201ENST00000415776 1125 ntBASIC13.89□□□□□ -0.19
COL12A1Q99715 ACTG1P11-201ENST00000425411 1125 ntBASIC13.89□□□□□ -0.19
COL12A1Q99715 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms