Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RPL17P45-201ENST00000586289 509 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 MIR6842-201ENST00000612539 65 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC9.79□□□□□ -0.84
HSPG2P98160 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 AL157792.1-201ENST00000488281 530 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC9.79□□□□□ -0.84
HSPG2P98160 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
HSPG2P98160 AL133267.1-201ENST00000398220 340 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 AC098935.1-201ENST00000446057 611 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 AC012618.1-201ENST00000461223 412 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
HSPG2P98160 AP001527.2-201ENST00000614441 631 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 AC007718.1-201ENST00000621078 280 ntBASIC9.79□□□□□ -0.84
HSPG2P98160 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC9.79□□□□□ -0.84
HSPG2P98160 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
HSPG2P98160 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC9.78□□□□□ -0.84
HSPG2P98160 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC9.78□□□□□ -0.84
HSPG2P98160 OARD1-204ENST00000464633 717 ntTSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 AC124947.2-201ENST00000547118 1133 ntBASIC9.78□□□□□ -0.84
HSPG2P98160 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC9.78□□□□□ -0.84
HSPG2P98160 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
HSPG2P98160 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC9.78□□□□□ -0.84
HSPG2P98160 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC9.78□□□□□ -0.84
HSPG2P98160 SAMD11P1-201ENST00000571429 661 ntBASIC9.78□□□□□ -0.84
HSPG2P98160 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC9.78□□□□□ -0.84
HSPG2P98160 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 AC100757.4-201ENST00000626934 759 ntBASIC9.78□□□□□ -0.84
HSPG2P98160 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 AL391256.1-201ENST00000443260 1855 ntBASIC9.78□□□□□ -0.84
HSPG2P98160 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
HSPG2P98160 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC9.78□□□□□ -0.84
HSPG2P98160 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
HSPG2P98160 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
HSPG2P98160 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC9.77□□□□□ -0.84
HSPG2P98160 AL160314.3-201ENST00000556041 767 ntBASIC9.77□□□□□ -0.84
HSPG2P98160 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC9.77□□□□□ -0.84
HSPG2P98160 AC004923.1-202ENST00000642106 209 ntBASIC9.77□□□□□ -0.84
HSPG2P98160 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC9.77□□□□□ -0.84
HSPG2P98160 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
HSPG2P98160 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC9.77□□□□□ -0.85
HSPG2P98160 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
HSPG2P98160 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
HSPG2P98160 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms