Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC21.17■□□□□ 0.98
RIPK4P57078 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC21.17■□□□□ 0.98
RIPK4P57078 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RIPK4P57078 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC21.16■□□□□ 0.98
RIPK4P57078 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RIPK4P57078 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 HAUS4P1-201ENST00000406739 1145 ntBASIC21.16■□□□□ 0.98
RIPK4P57078 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.16■□□□□ 0.98
RIPK4P57078 AC004890.2-204ENST00000481968 304 ntBASIC21.16■□□□□ 0.98
RIPK4P57078 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.16■□□□□ 0.98
RIPK4P57078 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.16■□□□□ 0.98
RIPK4P57078 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC21.16■□□□□ 0.98
RIPK4P57078 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
RIPK4P57078 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC21.16■□□□□ 0.98
RIPK4P57078 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC21.16■□□□□ 0.98
RIPK4P57078 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RIPK4P57078 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC21.15■□□□□ 0.98
RIPK4P57078 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 AL391005.1-201ENST00000623953 2435 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.15■□□□□ 0.98
RIPK4P57078 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC21.15■□□□□ 0.98
RIPK4P57078 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.15■□□□□ 0.98
RIPK4P57078 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RIPK4P57078 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.15■□□□□ 0.98
RIPK4P57078 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 UGT1A2P-201ENST00000454886 866 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 RNA5SP421-201ENST00000516864 134 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RIPK4P57078 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.15■□□□□ 0.98
RIPK4P57078 AC011467.4-201ENST00000594891 528 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 AL096865.1-201ENST00000606796 927 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.15■□□□□ 0.98
RIPK4P57078 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 CYP2T1P-202ENST00000641596 2535 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 AC018695.7-201ENST00000624587 2492 ntBASIC21.15■□□□□ 0.98
RIPK4P57078 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RIPK4P57078 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
RIPK4P57078 BNIP3P1-202ENST00000550043 1585 ntBASIC21.14■□□□□ 0.98
RIPK4P57078 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RIPK4P57078 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.14■□□□□ 0.98
RIPK4P57078 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC21.14■□□□□ 0.98
RIPK4P57078 AC134407.2-201ENST00000625089 1978 ntBASIC21.14■□□□□ 0.98
RIPK4P57078 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 AC004987.2-201ENST00000395959 1148 ntBASIC21.14■□□□□ 0.97
RIPK4P57078 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.14■□□□□ 0.97
RIPK4P57078 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.14■□□□□ 0.97
RIPK4P57078 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
RIPK4P57078 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC21.14■□□□□ 0.97
RIPK4P57078 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC21.14■□□□□ 0.97
RIPK4P57078 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms