Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LIMK1P53667 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.98■□□□□ 0.15
LIMK1P53667 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LIMK1P53667 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.98■□□□□ 0.15
LIMK1P53667 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.98■□□□□ 0.15
LIMK1P53667 GOLGA2P4-201ENST00000441462 777 ntBASIC15.98■□□□□ 0.15
LIMK1P53667 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 CTBP2P5-201ENST00000454986 1264 ntBASIC15.98■□□□□ 0.15
LIMK1P53667 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.98■□□□□ 0.15
LIMK1P53667 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.98■□□□□ 0.15
LIMK1P53667 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 AC092337.1-201ENST00000568699 1129 ntBASIC15.98■□□□□ 0.15
LIMK1P53667 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.98■□□□□ 0.15
LIMK1P53667 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
LIMK1P53667 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 AC018665.1-201ENST00000622927 1362 ntBASIC15.98■□□□□ 0.15
LIMK1P53667 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.98■□□□□ 0.15
LIMK1P53667 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.98■□□□□ 0.15
LIMK1P53667 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LIMK1P53667 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIMK1P53667 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
LIMK1P53667 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
LIMK1P53667 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.97■□□□□ 0.15
LIMK1P53667 KRT8P49-201ENST00000604166 1432 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 FAM21FP-201ENST00000426241 1131 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 FO681548.1-201ENST00000455617 1132 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 PFN1P12-201ENST00000455938 534 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.97■□□□□ 0.15
LIMK1P53667 AC099548.2-209ENST00000480264 625 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.97■□□□□ 0.15
LIMK1P53667 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
LIMK1P53667 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIMK1P53667 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.97■□□□□ 0.15
LIMK1P53667 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.97■□□□□ 0.15
LIMK1P53667 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.97■□□□□ 0.15
LIMK1P53667 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.97■□□□□ 0.15
LIMK1P53667 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIMK1P53667 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 PDIA3P1-201ENST00000471856 1510 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 HTR7P1-202ENST00000624664 4411 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 AL603756.1-201ENST00000606511 2163 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
LIMK1P53667 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.97■□□□□ 0.15
LIMK1P53667 AL021920.2-201ENST00000624828 1351 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 AC026691.1-201ENST00000602502 2017 ntBASIC15.97■□□□□ 0.15
LIMK1P53667 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.97■□□□□ 0.15
LIMK1P53667 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMK1P53667 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
LIMK1P53667 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
LIMK1P53667 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
LIMK1P53667 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMK1P53667 AL596257.1-201ENST00000641463 2694 ntBASIC15.96■□□□□ 0.15
LIMK1P53667 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
LIMK1P53667 MST1L-201ENST00000442552 2185 ntBASIC15.96■□□□□ 0.15
LIMK1P53667 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMK1P53667 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms