Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
KRT3P12035 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
KRT3P12035 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
KRT3P12035 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
KRT3P12035 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 CDC14C-201ENST00000428251 1719 ntBASIC17.12■□□□□ 0.33
KRT3P12035 LINC02447-202ENST00000501888 2146 ntBASIC17.12■□□□□ 0.33
KRT3P12035 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 AC068587.6-202ENST00000641839 5619 ntBASIC17.12■□□□□ 0.33
KRT3P12035 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT3P12035 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 DNAJB3-201ENST00000446806 729 ntBASIC17.11■□□□□ 0.33
KRT3P12035 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.11■□□□□ 0.33
KRT3P12035 ALG1L5P-201ENST00000482043 771 ntBASIC17.11■□□□□ 0.33
KRT3P12035 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 AC098859.1-201ENST00000502915 1238 ntBASIC17.11■□□□□ 0.33
KRT3P12035 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 KRT8P48-201ENST00000515599 1220 ntBASIC17.11■□□□□ 0.33
KRT3P12035 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.11■□□□□ 0.33
KRT3P12035 AC005829.1-201ENST00000570002 483 ntBASIC17.11■□□□□ 0.33
KRT3P12035 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.11■□□□□ 0.33
KRT3P12035 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 SPTSSB-204ENST00000617024 1292 ntBASIC17.11■□□□□ 0.33
KRT3P12035 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
KRT3P12035 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
KRT3P12035 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
KRT3P12035 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.1■□□□□ 0.33
KRT3P12035 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
KRT3P12035 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT3P12035 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.1■□□□□ 0.33
KRT3P12035 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT3P12035 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT3P12035 AC079140.1-201ENST00000508039 487 ntBASIC17.1■□□□□ 0.33
KRT3P12035 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT3P12035 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.1■□□□□ 0.33
KRT3P12035 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
KRT3P12035 MIR4321-201ENST00000592276 80 ntBASIC17.1■□□□□ 0.33
KRT3P12035 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.1■□□□□ 0.33
KRT3P12035 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.1■□□□□ 0.33
KRT3P12035 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
KRT3P12035 AC007950.2-201ENST00000615045 2347 ntBASIC17.1■□□□□ 0.33
KRT3P12035 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
KRT3P12035 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
KRT3P12035 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms