Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
HOXC4P09017 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 AC011477.6-201ENST00000604980 1927 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 AC098614.1-201ENST00000368528 745 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 NME2P1-201ENST00000426182 414 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC4P09017 TARDBPP1-201ENST00000442013 1203 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
HOXC4P09017 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC4P09017 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.71■□□□□ 0.11
HOXC4P09017 RARRES2P5-201ENST00000564013 466 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HOXC4P09017 AL450472.2-201ENST00000603663 1156 ntBASIC15.71■□□□□ 0.11
HOXC4P09017 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.71■□□□□ 0.11
HOXC4P09017 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
HOXC4P09017 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
HOXC4P09017 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.71■□□□□ 0.11
HOXC4P09017 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HOXC4P09017 REXO1L1P-202ENST00000608646 1974 ntBASIC15.71■□□□□ 0.1
HOXC4P09017 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC4P09017 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC4P09017 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
HOXC4P09017 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HOXC4P09017 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.7■□□□□ 0.1
HOXC4P09017 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC4P09017 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC023310.3-201ENST00000557027 670 ntBASIC15.7■□□□□ 0.1
HOXC4P09017 AC100756.1-201ENST00000562736 682 ntBASIC15.7■□□□□ 0.1
HOXC4P09017 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC138749.3-201ENST00000567691 622 ntBASIC15.7■□□□□ 0.1
HOXC4P09017 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.7■□□□□ 0.1
HOXC4P09017 AC116165.1-201ENST00000611806 668 ntBASIC15.7■□□□□ 0.1
HOXC4P09017 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HOXC4P09017 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HOXC4P09017 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXC4P09017 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HOXC4P09017 TNRC18P3-201ENST00000441896 2691 ntBASIC15.7■□□□□ 0.1
HOXC4P09017 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC4P09017 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 AC134407.2-201ENST00000625089 1978 ntBASIC15.69■□□□□ 0.1
HOXC4P09017 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXC4P09017 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXC4P09017 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXC4P09017 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms