Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CHMP2AO43633 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
CHMP2AO43633 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.24■□□□□ 0.51
CHMP2AO43633 AC055876.3-201ENST00000431496 288 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 AC097493.3-201ENST00000509725 367 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.24■□□□□ 0.51
CHMP2AO43633 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.24■□□□□ 0.51
CHMP2AO43633 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.24■□□□□ 0.51
CHMP2AO43633 MIR4321-201ENST00000592276 80 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.24■□□□□ 0.51
CHMP2AO43633 AL365330.1-201ENST00000607459 531 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 AC138649.4-201ENST00000612222 287 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CHMP2AO43633 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CHMP2AO43633 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 AC006449.6-201ENST00000612330 2296 ntBASIC18.24■□□□□ 0.51
CHMP2AO43633 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP2AO43633 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CHMP2AO43633 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AC092580.3-201ENST00000430932 139 ntBASIC18.23■□□□□ 0.51
CHMP2AO43633 AC027369.6-201ENST00000525520 931 ntBASIC18.23■□□□□ 0.51
CHMP2AO43633 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.23■□□□□ 0.51
CHMP2AO43633 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 AL589739.1-201ENST00000607720 493 ntBASIC18.23■□□□□ 0.51
CHMP2AO43633 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 AC073592.8-201ENST00000624126 511 ntBASIC18.23■□□□□ 0.51
CHMP2AO43633 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP2AO43633 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP2AO43633 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP2AO43633 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP2AO43633 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 AL035456.1-201ENST00000456064 1369 ntBASIC18.22■□□□□ 0.51
CHMP2AO43633 PCDHB19P-201ENST00000570871 2371 ntBASIC18.22■□□□□ 0.51
CHMP2AO43633 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.22■□□□□ 0.51
CHMP2AO43633 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.22■□□□□ 0.51
CHMP2AO43633 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.22■□□□□ 0.51
CHMP2AO43633 AL158211.3-201ENST00000607385 239 ntBASIC18.22■□□□□ 0.51
CHMP2AO43633 AL138828.2-201ENST00000615812 383 ntBASIC18.22■□□□□ 0.51
CHMP2AO43633 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP2AO43633 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.22■□□□□ 0.51
CHMP2AO43633 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP2AO43633 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP2AO43633 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms