Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 MIR346-201ENST00000362234 95 ntBASIC17.37■□□□□ 0.37
FOXN3O00409 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 AC142381.1-201ENST00000426099 345 ntBASIC17.37■□□□□ 0.37
FOXN3O00409 SPCS2P4-201ENST00000436160 681 ntBASIC17.37■□□□□ 0.37
FOXN3O00409 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.37■□□□□ 0.37
FOXN3O00409 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.37■□□□□ 0.37
FOXN3O00409 MTDHP5-201ENST00000598980 586 ntBASIC17.37■□□□□ 0.37
FOXN3O00409 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
FOXN3O00409 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXN3O00409 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXN3O00409 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 HTR5BP-201ENST00000430851 1154 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 SPDYE11-202ENST00000450699 704 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.36■□□□□ 0.37
FOXN3O00409 ALG1L5P-201ENST00000482043 771 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 AC079140.1-201ENST00000508039 487 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXN3O00409 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXN3O00409 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXN3O00409 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXN3O00409 SPDYE9P-201ENST00000570642 692 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 AC061975.2-201ENST00000581722 295 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 SPDYE10P-202ENST00000612005 668 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 SPDYE8P-202ENST00000612377 668 ntBASIC17.36■□□□□ 0.37
FOXN3O00409 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXN3O00409 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXN3O00409 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
FOXN3O00409 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.35■□□□□ 0.37
FOXN3O00409 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
FOXN3O00409 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXN3O00409 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
FOXN3O00409 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms