Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC243562.2-201ENST00000561247 970 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AC004840.1-201ENST00000636359 365 ntBASIC17.4■□□□□ 0.38
CNTN3Q9P232 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CNTN3Q9P232 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.4■□□□□ 0.38
CNTN3Q9P232 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CNTN3Q9P232 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.39■□□□□ 0.37
CNTN3Q9P232 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CNTN3Q9P232 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.39■□□□□ 0.37
CNTN3Q9P232 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 FO393414.2-201ENST00000405153 598 ntBASIC17.38■□□□□ 0.37
CNTN3Q9P232 AL035633.1-201ENST00000406139 838 ntBASIC17.38■□□□□ 0.37
CNTN3Q9P232 SPTLC1P1-201ENST00000447199 261 ntBASIC17.38■□□□□ 0.37
CNTN3Q9P232 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 MIR6069-201ENST00000620069 79 ntBASIC17.38■□□□□ 0.37
CNTN3Q9P232 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CNTN3Q9P232 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CNTN3Q9P232 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.37■□□□□ 0.37
CNTN3Q9P232 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.37■□□□□ 0.37
CNTN3Q9P232 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CNTN3Q9P232 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.37■□□□□ 0.37
CNTN3Q9P232 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CNTN3Q9P232 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CNTN3Q9P232 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CNTN3Q9P232 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CNTN3Q9P232 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms