Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC002056.1-201ENST00000395613 760 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 ACTG1P14-201ENST00000446382 1122 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 AP002490.2-201ENST00000524791 560 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AP002472.1-201ENST00000577490 586 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC091812.2-201ENST00000619081 385 ntBASIC15.63■□□□□ 0.09
VMP1Q96GC9 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VMP1Q96GC9 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VMP1Q96GC9 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.62■□□□□ 0.09
VMP1Q96GC9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VMP1Q96GC9 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 TSPY26P-202ENST00000565928 3884 ntBASIC15.62■□□□□ 0.09
VMP1Q96GC9 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
VMP1Q96GC9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC092919.2-201ENST00000623631 1645 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 ELL2P1-201ENST00000413990 1906 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC211486.1-202ENST00000416371 468 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VMP1Q96GC9 AC211476.1-201ENST00000503899 468 ntBASIC15.61■□□□□ 0.09
VMP1Q96GC9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VMP1Q96GC9 YBX1P5-201ENST00000509441 847 ntBASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms