Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC21.16■□□□□ 0.98
USP54Q70EL1 HADH-212ENST00000638621 741 ntTSL 5 BASIC21.16■□□□□ 0.98
USP54Q70EL1 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC21.16■□□□□ 0.98
USP54Q70EL1 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.16■□□□□ 0.98
USP54Q70EL1 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 AC011477.6-201ENST00000604980 1927 ntBASIC21.16■□□□□ 0.98
USP54Q70EL1 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.16■□□□□ 0.98
USP54Q70EL1 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP54Q70EL1 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC21.15■□□□□ 0.98
USP54Q70EL1 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC21.15■□□□□ 0.98
USP54Q70EL1 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
USP54Q70EL1 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC21.15■□□□□ 0.98
USP54Q70EL1 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
USP54Q70EL1 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC21.15■□□□□ 0.98
USP54Q70EL1 GPR39-203ENST00000622084 900 ntTSL 5 BASIC21.15■□□□□ 0.98
USP54Q70EL1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP54Q70EL1 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.15■□□□□ 0.98
USP54Q70EL1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC21.15■□□□□ 0.98
USP54Q70EL1 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 KRT8P44-201ENST00000441609 1350 ntBASIC21.15■□□□□ 0.98
USP54Q70EL1 AC020907.1-201ENST00000616460 1350 ntBASIC21.15■□□□□ 0.98
USP54Q70EL1 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC21.15■□□□□ 0.98
USP54Q70EL1 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
USP54Q70EL1 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP54Q70EL1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP54Q70EL1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP54Q70EL1 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP54Q70EL1 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP54Q70EL1 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC21.14■□□□□ 0.97
USP54Q70EL1 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
USP54Q70EL1 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 B9D1-203ENST00000395615 805 ntTSL 3 BASIC21.14■□□□□ 0.97
USP54Q70EL1 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC21.14■□□□□ 0.97
USP54Q70EL1 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC21.14■□□□□ 0.97
USP54Q70EL1 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
USP54Q70EL1 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.14■□□□□ 0.97
USP54Q70EL1 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 LARP4-220ENST00000615080 856 ntTSL 5 BASIC21.14■□□□□ 0.97
USP54Q70EL1 MIR6787-201ENST00000616675 61 ntBASIC21.14■□□□□ 0.97
USP54Q70EL1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 AL138709.1-201ENST00000614840 1693 ntBASIC21.14■□□□□ 0.97
USP54Q70EL1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP54Q70EL1 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC21.13■□□□□ 0.97
USP54Q70EL1 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC21.13■□□□□ 0.97
USP54Q70EL1 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC21.13■□□□□ 0.97
USP54Q70EL1 AL590640.2-201ENST00000457038 527 ntBASIC21.13■□□□□ 0.97
USP54Q70EL1 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC21.13■□□□□ 0.97
USP54Q70EL1 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC21.13■□□□□ 0.97
USP54Q70EL1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
USP54Q70EL1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC21.13■□□□□ 0.97
USP54Q70EL1 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP54Q70EL1 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC21.12■□□□□ 0.97
USP54Q70EL1 C2orf69P2-201ENST00000562032 1123 ntBASIC21.12■□□□□ 0.97
USP54Q70EL1 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC092171.3-201ENST00000610122 2651 ntBASIC21.12■□□□□ 0.97
USP54Q70EL1 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms