Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 BOLA2P3-201ENST00000404566 256 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AL591846.1-201ENST00000451736 433 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AKR7A2P1-201ENST00000460134 915 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC091804.1-201ENST00000486888 567 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AP001889.1-201ENST00000525414 633 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 AL365330.1-201ENST00000607459 531 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AC097724.1-201ENST00000609581 426 ntBASIC13.29□□□□□ -0.28
VPS13CQ709C8 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
VPS13CQ709C8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13CQ709C8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC106760.1-201ENST00000508690 800 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 FLJ38576-201ENST00000623820 2459 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC005622.1-201ENST00000636801 1703 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 NKAIN1P1-201ENST00000435754 582 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 MIR4321-201ENST00000592276 80 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC016629.1-201ENST00000596579 586 ntBASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
VPS13CQ709C8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13CQ709C8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13CQ709C8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13CQ709C8 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 HIST2H2BC-201ENST00000498492 580 ntBASIC13.27□□□□□ -0.28
VPS13CQ709C8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13CQ709C8 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.28
VPS13CQ709C8 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13CQ709C8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13CQ709C8 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13CQ709C8 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13CQ709C8 SOCS2P1-201ENST00000417727 557 ntBASIC13.27□□□□□ -0.29
VPS13CQ709C8 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.27□□□□□ -0.29
VPS13CQ709C8 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
VPS13CQ709C8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.27□□□□□ -0.29
VPS13CQ709C8 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13CQ709C8 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13CQ709C8 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms