Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.82■□□□□ 0.12
HNF4AP41235 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.82■□□□□ 0.12
HNF4AP41235 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HNF4AP41235 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 WASH6P-202ENST00000359512 1437 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HNF4AP41235 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 AC002056.1-201ENST00000395613 760 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.81■□□□□ 0.12
HNF4AP41235 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 MCCD1P2-201ENST00000423228 335 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 AC004832.2-201ENST00000426397 482 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HNF4AP41235 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.81■□□□□ 0.12
HNF4AP41235 AC010327.4-202ENST00000591484 748 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 MTDHP5-201ENST00000598980 586 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 AC016027.1-202ENST00000607927 1699 ntBASIC15.81■□□□□ 0.12
HNF4AP41235 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
HNF4AP41235 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HNF4AP41235 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.81■□□□□ 0.12
HNF4AP41235 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HNF4AP41235 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.8■□□□□ 0.12
HNF4AP41235 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.8■□□□□ 0.12
HNF4AP41235 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.8■□□□□ 0.12
HNF4AP41235 BX842568.4-201ENST00000421222 227 ntBASIC15.8■□□□□ 0.12
HNF4AP41235 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.8■□□□□ 0.12
HNF4AP41235 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.8■□□□□ 0.12
HNF4AP41235 ALG1L5P-201ENST00000482043 771 ntBASIC15.8■□□□□ 0.12
HNF4AP41235 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HNF4AP41235 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.8■□□□□ 0.12
HNF4AP41235 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.8■□□□□ 0.12
HNF4AP41235 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HNF4AP41235 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.8■□□□□ 0.12
HNF4AP41235 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms