Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.11■□□□□ 0.65
COL4A5P29400 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A5P29400 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.11■□□□□ 0.65
COL4A5P29400 AL354718.3-201ENST00000616414 581 ntBASIC19.11■□□□□ 0.65
COL4A5P29400 CR382287.1-201ENST00000623954 586 ntBASIC19.11■□□□□ 0.65
COL4A5P29400 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL4A5P29400 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A5P29400 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
COL4A5P29400 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A5P29400 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A5P29400 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A5P29400 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A5P29400 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A5P29400 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A5P29400 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A5P29400 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
COL4A5P29400 AC091046.1-201ENST00000331871 207 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.1■□□□□ 0.65
COL4A5P29400 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A5P29400 EIF4HP1-201ENST00000453115 687 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 PHKG1P2-201ENST00000457537 863 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 POU5F1P6-201ENST00000466990 990 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 SCARNA20.5-201ENST00000516991 142 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 AP001582.1-201ENST00000525856 295 ntBASIC19.1■□□□□ 0.65
COL4A5P29400 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.1■□□□□ 0.65
COL4A5P29400 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A5P29400 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
COL4A5P29400 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A5P29400 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A5P29400 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A5P29400 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 REXO1L1P-202ENST00000608646 1974 ntBASIC19.09■□□□□ 0.65
COL4A5P29400 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A5P29400 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.09■□□□□ 0.65
COL4A5P29400 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.09■□□□□ 0.65
COL4A5P29400 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A5P29400 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A5P29400 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.09■□□□□ 0.65
COL4A5P29400 AC018470.1-201ENST00000624790 3129 ntBASIC19.09■□□□□ 0.65
COL4A5P29400 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL4A5P29400 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 AL645608.8-201ENST00000606034 2086 ntBASIC19.09■□□□□ 0.65
COL4A5P29400 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A5P29400 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A5P29400 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL4A5P29400 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.08■□□□□ 0.65
COL4A5P29400 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms