Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
MSH4O15457 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.17■□□□□ 0.5
MSH4O15457 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH4O15457 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.17■□□□□ 0.5
MSH4O15457 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.17■□□□□ 0.5
MSH4O15457 AC134407.2-201ENST00000625089 1978 ntBASIC18.17■□□□□ 0.5
MSH4O15457 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH4O15457 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.16■□□□□ 0.5
MSH4O15457 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.16■□□□□ 0.5
MSH4O15457 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.16■□□□□ 0.5
MSH4O15457 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.16■□□□□ 0.5
MSH4O15457 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH4O15457 RNA5SP421-201ENST00000516864 134 ntBASIC18.16■□□□□ 0.5
MSH4O15457 AC243562.2-201ENST00000561247 970 ntBASIC18.16■□□□□ 0.5
MSH4O15457 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
MSH4O15457 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.16■□□□□ 0.5
MSH4O15457 AL096865.1-201ENST00000606796 927 ntBASIC18.16■□□□□ 0.5
MSH4O15457 AL844908.2-201ENST00000609461 460 ntBASIC18.16■□□□□ 0.5
MSH4O15457 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.16■□□□□ 0.5
MSH4O15457 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.16■□□□□ 0.5
MSH4O15457 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
MSH4O15457 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH4O15457 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MSH4O15457 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.15■□□□□ 0.5
MSH4O15457 HIST3H2BA-201ENST00000436555 524 ntBASIC18.15■□□□□ 0.5
MSH4O15457 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.15■□□□□ 0.5
MSH4O15457 UGT1A2P-201ENST00000454886 866 ntBASIC18.15■□□□□ 0.5
MSH4O15457 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.15■□□□□ 0.5
MSH4O15457 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH4O15457 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH4O15457 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH4O15457 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 AC087499.5-201ENST00000452760 1342 ntBASIC18.15■□□□□ 0.5
MSH4O15457 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
MSH4O15457 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH4O15457 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH4O15457 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MSH4O15457 AP001282.1-201ENST00000531301 1499 ntBASIC18.14■□□□□ 0.5
MSH4O15457 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
MSH4O15457 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
MSH4O15457 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.14■□□□□ 0.49
MSH4O15457 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.14■□□□□ 0.49
MSH4O15457 MRPS18AP1-201ENST00000414458 589 ntBASIC18.14■□□□□ 0.49
MSH4O15457 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms