Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SPDYE7P-202ENST00000420373 878 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 AC051619.7-201ENST00000568314 623 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 MIR6080-201ENST00000617359 66 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 AC008677.1-201ENST00000519230 1561 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 LINC02199-201ENST00000506655 2702 ntBASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A3BPQ9Y5P4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 MIR770-201ENST00000390219 98 ntBASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 AC006449.6-201ENST00000612330 2296 ntBASIC18.19■□□□□ 0.5
COL4A3BPQ9Y5P4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 KLF2P3-201ENST00000451977 1087 ntBASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 AL592424.1-201ENST00000563624 1536 ntBASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A3BPQ9Y5P4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 AP3S2-216ENST00000617003 1561 ntBASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms