Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MIR574-201ENST00000385209 96 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 RHOQP3-201ENST00000437982 621 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 AC018845.2-201ENST00000568326 409 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 MIR4515-201ENST00000584082 81 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 AC021097.1-201ENST00000607902 574 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 U82695.1-201ENST00000635752 1889 ntBASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AL031432.2-201ENST00000566714 459 ntBASIC13.19□□□□□ -0.3
FOXA2Q9Y261 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AL928711.1-201ENST00000570165 459 ntBASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AC004877.2-201ENST00000623941 599 ntBASIC13.19□□□□□ -0.3
FOXA2Q9Y261 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 AC104640.1-201ENST00000562617 2109 ntBASIC13.19□□□□□ -0.3
FOXA2Q9Y261 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA2Q9Y261 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 PMS2P7-201ENST00000506558 1336 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 AC092384.3-202ENST00000564646 2873 ntBASIC13.18□□□□□ -0.3
FOXA2Q9Y261 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
FOXA2Q9Y261 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms