Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 AL133215.2-201ENST00000609242 977 ntBASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 SNX33P1-201ENST00000592116 1762 ntBASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.27■□□□□ 0.2
TM9SF3Q9HD45 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TM9SF3Q9HD45 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 AC092068.3-201ENST00000587894 2016 ntBASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TM9SF3Q9HD45 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AC007541.1-201ENST00000570282 1469 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AL080243.2-201ENST00000418783 582 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 MEIS3P1-201ENST00000495167 958 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AL079307.3-201ENST00000556114 283 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 AL132655.2-201ENST00000596276 594 ntBASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.25■□□□□ 0.19
TM9SF3Q9HD45 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms