Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 EEF1DP4-201ENST00000446006 880 ntBASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 RN7SL618P-201ENST00000477850 296 ntBASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AL033527.5-202ENST00000641632 1098 ntBASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AC011676.5-201ENST00000624864 2660 ntBASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4AQ9BY43 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SDHAP3-202ENST00000515467 728 ntBASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 AC009118.2-201ENST00000613275 655 ntBASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 MTHFR-217ENST00000641820 1569 ntBASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP4AQ9BY43 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 AC009477.1-201ENST00000452936 217 ntBASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP4AQ9BY43 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.9
CHMP4AQ9BY43 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4AQ9BY43 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4AQ9BY43 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4AQ9BY43 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHMP4AQ9BY43 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms