Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC093004.1-201ENST00000508850 424 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 TPRX2P-201ENST00000535362 881 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 LTB4R2-202ENST00000528054 3092 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC138969.3-201ENST00000546612 1459 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC138932.2-201ENST00000548268 1459 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC126755.4-201ENST00000549796 1459 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AL662844.4-201ENST00000606367 2838 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 AC092364.2-201ENST00000596710 2692 ntBASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PAAF1Q9BRP4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 FO393414.2-201ENST00000405153 598 ntBASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 AC098850.1-201ENST00000419919 790 ntBASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 MEIS3P1-201ENST00000495167 958 ntBASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 AC007431.3-201ENST00000623221 587 ntBASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 BNIP3P1-202ENST00000550043 1585 ntBASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PAAF1Q9BRP4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 GK-202ENST00000378941 458 ntTSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 AC004987.2-201ENST00000395959 1148 ntBASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 AC074044.1-201ENST00000609673 707 ntBASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.21■□□□□ 0.35
PAAF1Q9BRP4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms