Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 PCDH8P1-201ENST00000428983 2773 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 AL353705.2-201ENST00000428243 662 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 SPDYE22P-201ENST00000582158 798 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 AC025048.6-201ENST00000634326 1161 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 PCDHB19P-201ENST00000570871 2371 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS52Q8N1B4 AL035456.1-201ENST00000456064 1369 ntBASIC17.66■□□□□ 0.42
VPS52Q8N1B4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 SPTSSB-204ENST00000617024 1292 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 AC073439.1-201ENST00000624121 1774 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 TUBB8P12-201ENST00000308911 1335 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 TUBB7P-202ENST00000428444 1305 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 TUBB8P7-204ENST00000567960 1332 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 AGGF1P2-201ENST00000426656 2106 ntBASIC17.65■□□□□ 0.42
VPS52Q8N1B4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS52Q8N1B4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS52Q8N1B4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS52Q8N1B4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS52Q8N1B4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.64■□□□□ 0.42
VPS52Q8N1B4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 AL671710.1-201ENST00000610245 2349 ntBASIC17.64■□□□□ 0.41
VPS52Q8N1B4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.64■□□□□ 0.41
VPS52Q8N1B4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS52Q8N1B4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms